Hi, I am trying to use strict perl coding for this simple task, but my variable returns empty. Why?
use strict;
my $final_res='';
open FILE, $infile;
while(my $final_line=<FILE>)
{
if($final_line=~/^SeqID/)
{
my $final_line=<FILE>; chomp $final_line;
my @split_final=split(/\t/, $final_line);
my $final_res = $split_final[7];
$final_res=~s/D/M/g;
$final_res=~s/U/M/g;
#print $final_res."\n";
}
}
close FILE;
print $final_res."\n";
If I print inside the loop, in the comment, it prints fine. what am I missing?
Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
Read Where should I post X? if you're not absolutely sure you're posting in the right place.
Please read these before you post! —
Posts may use any of the Perl Monks Approved HTML tags:
- a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
| |
For: |
|
Use: |
| & | | & |
| < | | < |
| > | | > |
| [ | | [ |
| ] | | ] |
Link using PerlMonks shortcuts! What shortcuts can I use for linking?
See Writeup Formatting Tips and other pages linked from there for more info.