update: /tmp/ssh_del_$$.txt is COMPLETE
Ah, from your post Re^2: Net::OpenSSH loosing lines ins reply, I understood "/tmp/ssh_del_$$.txt" was also missing some lines even if the file size was the same!
if STDOUT were completely empty, I would suspect of Sys::SigAction doing something funny to STDOUT, but you say that the line numbers are there... I can not imagine how that could happen. Is like if $_ were changing from one call to the next?
You can try reducing the script, first removing Net::OpenSSH from it. You already have the output on the /tmp/ssh_del_$$.txt files, so you don't need to retrieve them again.
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