OK, thanks guys.

I checked and indeed I had not installed BioPerl. However, even after installing it the output is unchanged: I get files with the headers I would be expecting to get based on the associated publication, but no content under the headers.

About the Excel-corrupted file: I have made a fixed version. I will never understand why Microsoft does not want to fix this. It's so annoying when protein Sep7 randomly turns into September 7!

In reply to Re^2: local packages in windows by Arthfael
in thread local packages in windows by Arthfael

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