What is the expected output?

I can see the matching part at line 180: 

180    G    179    181    230    180
181    U    180    182    229    181
182    U    181    183    228    182
183    C    182    184    227    183
184    U    183    185    226    184
185    U    184    186    225    185
186    A    185    187    0    186
187    U    186    188    0    187
188    U    187    189    0    188
189    U    188    190    0    189
190    G    189    191    0    190
191    C    190    192    224    191
192    A    191    193    223    192
193    C    192    194    222    193
194    C    193    195    221    194
195    U    194    196    220    195
196    A    195    197    0    196
197    C    196    198    218    197
198    U    197    199    217    198

[download]

which corresponds to the following match:

3-Match:    GTTCTTATTTGCACCTACT    6    180

[download]

What do you want to do with it?

لսႽ† ᥲᥒ⚪⟊Ⴙᘓᖇ Ꮅᘓᖇ⎱ Ⴙᥲ𝇋ƙᘓᖇ

In reply to Re^3: Key value pair in hash inside while loop by choroba
in thread Key value pair in hash inside while loop by newtoperlprog

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