Running perltidy using an Idle Timer should get perltidy to run at a reasonable interval and, I would think, help with formatting conflicts. I'd expect perltidy to be guaranteed to run after emacs did any alignment it intended to do since it will only run while "idle".

Good Day,
    Dean

In reply to Re: combining emacs' cperl-mode formatting with Perltidy by duelafn
in thread combining emacs' cperl-mode formatting with Perltidy by LanX

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