Hello, haukex, Thank you so much for your great help!

administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -ins
+tall

    Current base directory for HOMER is /home/administrator/homer/./

--2019-06-30 08:39:34--  http://homer.ucsd.edu/homer/update.txt
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 16187 (16K) [text/plain]
Saving to: ‘/home/administrator/homer/.//update.txt’

100%[================================================================>
+] 16,187      --.-K/s   in 0.05s   

2019-06-30 08:39:34 (293 KB/s) - ‘/home/administrator/homer/.//update.
+txt’ saved [16187/16187]

    Updating Settings...
`wget -O 0.133731155962781.tmp http://homer.ucsd.edu/homer/configureHo
+mer.pl`;
--2019-06-30 08:39:34--  http://homer.ucsd.edu/homer/configureHomer.pl
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 26485 (26K) [application/x-perl]
Saving to: ‘0.133731155962781.tmp’

100%[================================================================>
+] 26,485      --.-K/s   in 0.06s   

2019-06-30 08:39:34 (467 KB/s) - ‘0.133731155962781.tmp’ saved [26485/
+26485]

    configureHomer.pl script is up-to-date
    Packages to Install...
        homer -> 

    Checking for standard utilities and 3rd party software:

        (Note: seqlogo, gs, and blat no longer required)
    Checking for wget... /usr/bin/wget
    Checking for cut... /usr/bin/cut
    Checking for gcc... /usr/bin/gcc
    Checking for g++... /usr/bin/g++
    Checking for zip... /usr/bin/zip
    Checking for unzip... /usr/bin/unzip
    Checking for make... /usr/bin/make
    Checking for tar... /bin/tar
    Checking for gunzip... /bin/gunzip
    Checking for gzip... /bin/gzip

    All auxilary programs found.

    Installing: homer
        Downloading...
--2019-06-30 08:39:34--  http://homer.ucsd.edu/homer/data/software/hom
+er.v4.10.4.zip
Resolving homer.ucsd.edu (homer.ucsd.edu)... 169.228.63.226
Connecting to homer.ucsd.edu (homer.ucsd.edu)|169.228.63.226|:80... co
+nnected.
HTTP request sent, awaiting response... 200 OK
Length: 35758069 (34M) [application/zip]
Saving to: ‘homer.package.zip’

100%[================================================================>
+] 35,758,069  31.6MB/s   in 1.1s   

2019-06-30 08:39:36 (31.6 MB/s) - ‘homer.package.zip’ saved [35758069/
+35758069]

        Unzipping...
        Finished Installing homer

administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -big
+WigUrl

    Current base directory for HOMER is /home/administrator/homer/./

    Updating Settings...
Use of uninitialized value $val in concatenation (.) or string at conf
+igureHomer.pl line 599.
administrator@ACB-HuangLab-Ubuntu:~/homer$ perl configureHomer.pl -big
+WigDir

    Current base directory for HOMER is /home/administrator/homer/./

    Updating Settings...
Use of uninitialized value $val in concatenation (.) or string at conf
+igureHomer.pl line 599.
administrator@ACB-HuangLab-Ubuntu:~/homer$
[download]

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