One feature of your example data here is that the field of interest (the "name" field) is always the first field in the record, i.e., always at the start of a string read from a file. (Update: This approach assumes that the $rx_sep field separator pattern cannot possibly appear in a "name" field!) This anchor can be very useful. If you build a regex to match all the names "of interest" (see haukex's article Building Regex Alternations Dynamically), it's a one-pass process to read all records in a file and match and extract only those records of interest.
Note that $rx_sep has to be adjusted to match whatever field separator your data records actually use.c:\@Work\Perl\monks>perl use strict; use warnings; my @names = qw(1000567/1 1000567/2 122854/1 1000574/2); my $rx_sep = qr{ , }xms; # adjust to match real field separator my ($rx_interesting) = map qr{ \A (?: $_) (?= $rx_sep) }xms, join q{ | }, map quotemeta, # proper! reverse sort # order! @names ; print "$rx_interesting \n"; # for debug my @data = ( '1083978/2,284224,284292,chrX,255,+,284224,284292,255,0,0,1,68,0', '122854/1,284224,284277,chrX,255,+,284224,284277,255,0,0,1,53,0', '641613/1,284224,284290,chrX,255,+,284224,284290,255,0,0,1,66,0', ); while (my $datum = shift @data) { print "interesting: >$datum< \n" if $datum =~ $rx_interesting; } __END__ (?msx-i: \A (?: 122854\/1 | 1000574\/2 | 1000567\/2 | 1000567\/1) (?= +(?msx-i: , )) ) interesting: >122854/1,284224,284277,chrX,255,+,284224,284277,255,0,0, +1,53,0<
Update 1: I didn't notice that haukex already suggested this approach here. Oh well... At least you have a worked example :)
Update 2: I've noticed a stupid mistake in my code as originally posted. A part of the sequence of operations to build $rx_interesting was incorrectly given as
reverse sort
map quotemeta,
The code has been corrected. The error (quotemeta-ing before sort-ing) should have made no difference in this particular application, but there are corner cases (update: in other potential applications) in which it would (although I'm unable to think of a good example of such a case ATM).
Give a man a fish: <%-{-{-{-<
In reply to Re^3: Extacting lines where one column matches a name from a list of names (updated)
by AnomalousMonk
in thread Extacting lines where one column matches a name from a list of names
by mr_clean
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