Hi
I have file containing two columns, Genes and Genetype. I would like to create a hash where the gene is the key and the genotype is the value. I then would like to count and print out how many genes have a specific genotype. So for example:
CECR1 protein_coding
IKBKGP1 pseudogene
ADA protein_coding
I would like to have an output:
protein_coding 2
pseudogene 1
I have come this far:
#open the textfile GeneType.txt
open (GENETYPE, "GeneType.txt") or die "Could not open file";
while (<GENETYPE>){
($GeneName, $GeneType)= split (/\t/, $_);
$GeneHash{$GeneName} = $GeneType; #create hash
my $scalar = delete $GeneHash{GeneName}; #removes the first line w
+hich is a header
print (each %GeneHash); #printing out the has just as a check
I am guessing I should use a for or foreach loop to iterate over the hash, but can't understand how.
Thanks
/beginner
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