I can't provide a sscce because it's a very large module. I was using 6.05 but upgraded to 6.06 after your inquiry. It still fails with the same errors except one minor difference I don't understand (2695 -> 2698): 
collapse_sibling_evals: nested evals in (eval 2695)
collapse_sibling_evals: nested evals in (eval 2698)
Debugging nytprof is over my head but I can see from the comments around line 430 in /Devel/NYTProf/FileInfo.pm that someone anticipated problems. How would you patch this? 
# Should return the filename that the application used when loading th
+e file
# For evals should remove the @INC portion from within the "(eval N)[$
+path]"
# and similarly for Class::MOP #line evals "... defined at $path".
# This is a bit of a fudge. Filename handling should be improved in th
+e profiler.
sub filename_without_inc {
    my $self = shift;
    my $f    = [$self->filename];
    strip_prefix_from_paths([$self->profile->inc], $f, # line 430
        qr/(?: ^ | \[ | \sdefined\sat\s )/x
    );
    return $f->[0];
}

[download]

In reply to Re^2: NYTProf line report failure by Anonymous Monk
in thread NYTProf line report failure by Anonymous Monk

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":


  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.