I apologize for wasting everyone's time. It was right in front of me, and I ended up fixing the issue by attempting to anonymize, which is why you couldn't find it.
Before I changed names, I had something more like below:
foreach my $key (sort { $hashNew{$a} cmp $hashOld{$b} } keys %hashOld)
In making the short one I changed the hash names, and made them the same, because I knew that's what I was supposed to do, but didn't notice that I had the wrong variables. My hashes were similar enough that I only got a few errors, instead of thousands, because the key existed in both in most cases
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