Simple non-recursive way.
(I don't have Windows to test on, but this runs on ArchLinux.)

#!/usr/bin/perl

use strict; # https://perlmonks.org/?node_id=11150213
use warnings;
use IO::Compress::Zip qw{zip $ZipError};

my @paths = '.'; # FIXME set to the base of your folder
while( defined( my $path = pop @paths) )
  {
  if( -d $path )
    {
    opendir my $dh, $path or die "dir $path errro $1 on opendir";
    push @paths, map "$path/$_", grep !/^\.\.?\z/, readdir $dh;
    }
  elsif( -f $path and $path =~ /00\z/ )
    {
    print "found to zip: $path\n";
#   (zip $path, "$path.zip") ? unlink $path : die "$ZipError on $path"
+; # untested
    }
  }
[download]

Of course, uncomment the 'zip' line to have it actually do the zipping, and set @paths to the appropriate directory (or directories).

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