Sorry, but I don't see how the script shown can produce that error message; perhaps you modified it, in that case you need to post the full code, or, the error message is actually coming from one of the two executed commands, in which case that needs to be debugged...

I'm not sure how many monks here might already have experience with SLURM, gromacs, et al, but if it's only a few, the rest of us will need all the information you can provide so that we can help you best. To that effect, it would be good if you could read I know what I mean. Why don't you? and How do I post a question effectively?


In reply to Re^3: How can I convert my script for submitting SLURM jobs from Bash to Perl? by Anonymous Monk
in thread How can I convert my script for submitting SLURM jobs from Bash to Perl? by erhan

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.