from my understanding of this module, I wrote a simple script to permutation test. The outer loop is for generating
random sequences for inner loop to use. I mean that, I do 1000 computation, for example. Each computation in inner loop will use 16 CPUs and other parameters to carry out a task dedicated by count_pwm_num(). But when I performed the task, I always got the complaint which is " Cannot fork: Cannot allocate memory at /perl5/Parallel/ForkManager.pm line 589"
Here is the code.
foreach my $shuffle_id (1..$permutation) {
my $pm = Parallel::ForkManager->new( $multi_cpu_num );
PFM:
for my $pwm (@ciona_pwm_array) {
$pm->start and next PFM;
count_pwm_num($pwm,$seq_1,$seq_2);
$pm->finish;
}
$pm->wait_all_children;
}
Please point out where is the error in my code.
Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
Read Where should I post X? if you're not absolutely sure you're posting in the right place.
Please read these before you post! —
Posts may use any of the Perl Monks Approved HTML tags:
- a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
| |
For: |
|
Use: |
| & | | & |
| < | | < |
| > | | > |
| [ | | [ |
| ] | | ] |
Link using PerlMonks shortcuts! What shortcuts can I use for linking?
See Writeup Formatting Tips and other pages linked from there for more info.