$ReferenceFilePath is the name of the file,
FILE the file handler opened on this file and
@REFFILELIST is the array in which to store the lines of this file. Even though I would rather use lexical file handler and three-argument syntax for open, I do not see the syntax of this part of the code to be really wrong (just outdated and slightly deprecated).
I also do not consider storing reference data into an array to be wrong (a hash might be better, but we don't know enough about the data to be sure). But storing the data in an array and then looping on that array is not good, it would be better to iterate on the lines. My view is that it makes sense to store the reference data in memory if you then iterate on the large file and use the in-memory data structure to look up for something. But again, we don't know enough about the data and about the real intent of the program.
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