Input file is here, having more than 150 columns, i am showing only 3 here..

a sk asd

a sk lsd

a mk wsd

a lk asd

a lk lsd

a pk wsd

a pk asd

b sk lsd

b sk wsd

b mk asd

b lk lsd b lk wsd

c sk asd

c sk lsd

c mk wsd

c lk asd

c lk lsd

d sk wsd

d sk asd

d mk lsd

output will be like this...

a=7 sk=2 mk=1 lk=2 pk=2 asd=3 lsd=2

wsd=2

b=5 sk=2 mk=1 lk=2 pk=0 asd=1 lsd=2 wsd=2

c=5 sk=2 mk=1 lk=2 pk=0 asd=2 lsd=2 wsd=1

d=3 sk=2 mk=1 lk=0 pk=0 asd=1 lsd=1 wsd=1

what is the perl program of this ??

In reply to count frequency correspondint to one column by genome

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