Hi Monks, I have to filter >20GB files, just pulling any line that has a user specified keyword. It processes tab delimited file and searches through each field for keyword. I have the single threaded version here (please excuse my novice coding/commenting):
use strict; use warnings; use Data::Dumper; #declarations my @rawfile; my $filter_count=0; #input open(INFILE, "<$ARGV[0]") || die "cannot open file:$!"; #### #filter file #------------------ # parse entire file my $header = <INFILE>; #grabbing header chomp $header; my @headerArray = split("\t", $header); my $sizeheader=@headerArray; for my $line (<INFILE>) { chomp $line; my @splitline = split("\t", $line); #my $poskey = $splitline[0] . ":" . $splitline[1]; for (@splitline){ if (/^$ARGV[1]/){ $filter_count++; push(@rawfile,$line); } } } close INFILE; print "Completed filtering $ARGV[0]\n"; print "Found $filter_count elements\n"; my $outfilename = substr($ARGV[0],0,length($ARGV[0])-4)."_filter.txt"; print "Filtering to output file: $outfilename\n"; #### #output file #------------------ open(OUTFILE, ">$outfilename") || die "cannot open file to write: $!"; print OUTFILE "$header\n"; for (@rawfile) { print OUTFILE "$_\n"; } close OUTFILE;
I hope this will be a good example to learn threading from. Thanks!

In reply to How to split file for threading? by diyaz

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