If you can search the whole line without breaking it up, this:
for my $line (<INFILE>) {
chomp $line;
my @splitline = split("\t", $line);
#my $poskey = $splitline[0] . ":" . $splitline[1];
for (@splitline){
if (/^$ARGV[1]/){
$filter_count++;
push(@rawfile,$line);
}
}
}
can become this:
while (my $line = <INFILE>) {
chomp $line;
if ($line =~ /^$ARGV[1]/){
$filter_count++;
push(@rawfile,$line);
}
}
-stevieb
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