BLAST RESULT FILE

BLASTN 2.2.31+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.

 

Database: Arabidopsis_thaliana.mRNA.EST.fasta
           1,529,700 sequences; 400,627,814 total letters

 

Query= Contig1

Length=941
                                                                      
+Score     E
Sequences producing significant alignments:                          (
+Bits)  Value

  gi|61656031|gb|DN604734.1|DN604734 EST JCAt1g22640 Arabidopsis ...  
+219     4e-055
 

> gi|61656031|gb|DN604734.1|DN604734 EST JCAt1g22640 Arabidopsis 
Gateway cDNA Library Arabidopsis thaliana cDNA 3', mRNA sequence.
Length=740

 Score = 219 bits (118),  Expect = 4e-055
 Identities = 263/334 (79%), Gaps = 6/334 (2%)
 Strand=Plus/Minus

Query  60   AAAGGAGCTTGGACTAAAGAAGAAGATGAACGACTTATTTCTTATAT--TAAAACTCA
+CG  117
            ||||||||||||||||||||||||||| | |  ||| ||  ||| ||    |||  ||
+||
Sbjct  734  AAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAA--CA
+CG  677

Query  118  GCGAAGGTTGCTGGAGATCCCTTCCTAAAGCTGCCGGACTTCTCCGATGCGGTAAAAG
+TT  177
            | |||||||||||| |||| || |||   || || ||| | |   |||| ||||| ||
+||
Sbjct  676  GTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAG
+TT  617

Query  178  GCCGTCTCCGATGGATTAATTACTTGAGACCGGACCTTAAACGCGGTAATTTTACTGA
+AG  237
            |  |  |  ||||||| |||||  | ||||| || || ||| | || |||||||||||
+||
Sbjct  616  GTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAATTTTACTGA
+AG  557

Query  238  AAGAAGATGAACTCATTATCAAACTCCATAGCCTCCTTGGTAACAAATGGTCACTTAT
+AG  297
            |||||||||||||||| ||||| ||||||||| | || ||||||||||||||  | ||
+||
Sbjct  556  AAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATGGTCTTTAAT
+AG  497

Query  298  CCGGAAGATTACCAGGAAGAACAGATAATGAGATAAAAAATTACTGGAATACGCACAT
+-A  356
            | || ||||||||||||||||||||||| ||||| || || || ||||| || || ||
+ |
Sbjct  496  CTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATAT
+CA  437

Query  357  AGAAGGAAGCTTTTGAGTCGGGGCATTGATCCAA  390
            || ||||||||| | || || || ||||||||||
Sbjct  436  AG-AGGAAGCTTCTCAGCCGTGGGATTGATCCAA  404

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 326667943382


Query= Contig2

Length=1009


***** No hits found *****

 

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 350998085934


Query= Contig3

Length=529


***** No hits found *****

 

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 180381608828


Query= Contig4

Length=896
                                                                      
+Score     E
Sequences producing significant alignments:                          (
+Bits)  Value

  gi|152034016|gb|AU239642.2|AU239642 EST AU239642 RAFL21 Arabido...  
+167     1e-039

> gi|152034016|gb|AU239642.2|AU239642 EST AU239642 RAFL21 Arabidopsis 
thaliana cDNA clone RAFL21-11-C04 5', mRNA sequence.
Length=632

 Score = 167 bits (90),  Expect = 1e-039
 Identities = 260/345 (75%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  232  ATTGCCAATACTAAGTCTTGGTTCCAATTCTATGGCGACGGCTTTTCTATTCGTGTTC
+CA  291
            ||||| || ||||||||||||||||| | || |||    || ||  ||||| | ||||
+| 
Sbjct  286  ATTGCGAACACTAAGTCTTGGTTCCAGTACTTTGGTAGTGGGTTCGCTATTAGGGTTC
+CT  345

Query  292  CCGGAATTTCAGGACCTCACTGAGCCGGAGGATTATAATGCTGGCCTATCACTATATG
+GA  351
            || || ||| | ||| ||| |||||| ||||||||   ||| ||  | || || ||||
+| 
Sbjct  346  CCTGACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCTCTCTATG
+GT  405

Query  352  GATAAGGCTAAGCCCAAAAAATTT-GCAGCACGTTTTGCTTCTTCTGATGGATCCGAA
+GT  410
            || ||||| ||||| | ||| ||| || || || ||     || |||||||||| |||
+||
Sbjct  406  GACAAGGCAAAGCC-ACAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAA
+GT  464

Query  411  TTTAAGTGTCATAATTCGTCCATCCAATCAGCTGAAGATCACTTTCTTAGAGGCTAAA
+GA  470
            ||| |||||  | |||||||| || ||||| || ||||||||||||||||||||||||
+||
Sbjct  465  TTTGAGTGTAGTCATTCGTCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAA
+GA  524

Query  471  TATTACTGATTTAGGTTCACTTAAGGAGGCAGCAAAAATATTTGTTCCAGCTGGCTCA
+AC  530
            |||  ||||||| || ||| | ||||  || |||| | | |||||||||| ||   ||
+||
Sbjct  525  TATATCTGATTTGGGATCATTGAAGGCAGCTGCAAGACTTTTTGTTCCAGGTGCNGCA
+AC  584

Query  531  ACTATATTCTGTCCGCACAATAAAAATTAAAGAAGATGAGGGTTT  575
            | | || ||||  || ||||| ||  | || ||||| || |||||
Sbjct  585  AATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTT  629

Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 310567113752

[download]

In reply to Re^2: BLAST RESULT FILE by vineetha
in thread how to create output file using perl by vineetha

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":


  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.