Hi Sophie.

I don't even understand how your script is able to produce that output. For example: 
rattus_norvegicus    NA    NA    NA    NA    NA    NA (etc)...
rattus_norvegicus    5    13171176    13038994    -1    132183    NotC
+ontiguous_326154Gap (etc)...
rattus_norvegicus    5    13004812    12917777    -1    87036    NotCo
+ntiguous_253399Gap (etc)...

[download]
As far as I can tell, 'rattus norvegicus' at the beginning of a line should come from 
@arrayToPrint = ();
my @subArray =  ($chrInterval,$startInterval,$endInterval,$block,$orde
+r,$warning);
push(@arrayToPrint,@subArray);

[download]
But $chrInterval, $startInterval, $endInterval and $warning don't even change during the 'NORMALBLOCK' loop. Why does the output change then? Am I missing something?

And $chrInterval seems an unlikely name for a variable that contains 'rattus norvegicus'?

In reply to Re: Missing \t in print output by Anonymous Monk
in thread Missing \t in print output by Sophienz

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