Hi,

Thanks for your question. You are correct, I've cropped the output to only show where the problem appears.

So the ($chrInterval,$startInterval,$endInterval,$block,$order,$warning) elements don't appear, and they do not change within the NORMALBLOCK loop.

However, for each iteration of the SP loop, the elements ($newSp,$chr,$start,$end,$strand,$size,$comment) do change. The problem only happens when I print those elements separated by \t.

The whole line is 251 elements and would be unreadable on here, and won't fit in either apparently and unfortunately the problem only arises when I use a large number of species, ie. a large array.

Also note that this happened without any join step as well, when I was just printing the elements as they were defined.

Please let me know if I can make things clearer.

In reply to Re^2: Missing \t in print output by Sophienz
in thread Missing \t in print output by Sophienz

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