Gah I wish I'd known this:
As soon as Perl encounters such a directory, it will stop searching/
Found a directory in INC that was readable but not executable; changed to 755 and we're past the issue.
Still have to figure out why that directory is in INC in the first place; it's not in there when I check INC from the shell, and I don't see it anywhere in the apache config.
But things are working now. Thanks to both of you!
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