Hi GeneGeek,

Working backwards ... 

192       my ($first_site, $last_site) = $use_filtered ? @{$thresholds
+->{$dye}{'indices'}} : (0, $nchar-1);

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188       my $nchar = ${$tax_sample->{'NChar'}}[0];

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186 my $tax_sample = $data->{$taxon_label}{'Samples'}{$dye};

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158 my ($thresholds, $data, $comments);
159 {
160   if (@ARGV) {
161     my $gtr_fname = canonpath $ARGV[0];
162     open GTR_IN, $gtr_fname or die "Cannot open `$gtr_fname' for r
+eading: $!";
163   } else {
164     print STDERR "Reading data from standard input ...\n";
165     *GTR_IN = *STDIN;
166   }
167   ($thresholds, $data, $comments) = readGTR *GTR_IN;
168   close GTR_IN;
169 }

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34 use genotyping_utilities qw( &canonpath &openForWriting &readGTR &g
+etRepsTable &transpose &isReal &getReplicateGroups );

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So it looks like the hash is created by the readGTR() sub in genotyping_utilities . . .

The way forward always starts with a minimal test.

In reply to Re: Help De-bugging by 1nickt
in thread Help De-bugging by GeneGeek

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