I'm not sure where the disconnect is, it is Perl or Apache that is the issue?

Neither.

For ~/.bashrc to have an effect bash has to read it.

So the issues are, bash isn't running

or bash is running but its not reading .bashrc for documented reasons.

Solution is simple, read it yourself or make sure bash is instructed to read it, see Re: How to execute alias commands (source your profile)

In reply to Re: Getting system enviornmentals when running CGI by Anonymous Monk
in thread Getting system enviornmentals when running CGI by westrock2000

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