Hello everyone! I just started using perl in school and we have to create an alignement table for sequences. I made the whole structure and I understand what I have to do, put i don't exacty know how to print it 
#!/usr/bin/perl                                                       
+                                                                     
+                              
use strict;
use warnings;


my $S=" MSATPLTQEQKKA";

my $T=" MNATLTQQTKA";

my $n=length($S);

my $m=length($T);


my @seq1=split("",$S);

my @seq2=split("",$T);

print"\n\t ";
print"@seq1\n";

print"\t ";

for (my$j=0;$j<$n;$j=$j+1){
print" $j";
      
}

print"\n\t 0";
print"\n\t";

$initialvalue=0;

if($seq1[$i]==$seq2[$j]){
   $match=0
  
 if (($seq1[$i-1],$seq2[$j])>($seq1[$i],$seq2[$j-1])||($seq1[$i-1],$se
+q2[$j-1])
     $add=1
     print"$initialvalue+$match+$add\n"
}   

else($seq1[$i]!=$seq2[$j]{
     $initialvalue= $initialvalue+1
   if (($seq1[$i-1],$seq2[$j])>($seq1[$i],$seq2[$j-1])||($seq1[$i-1],$
+seq2[$j-1])
     $add=1
     print"$match+$add+$initialvalue\n"
     
  }

print"\n";

for (my$k=0;$k<$m;$k=$k+1){
  print"$seq2[$k] $k\n";
}

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The thing is that each element must be an addition to the minimum between the upper element, the diagonal one and the one on the left, Thank you and I'm sorry for my bad English!!

In reply to Perl Array by baconyluv5

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