Please, show us a sample input. The code (after some tweaking) seems to produce something with files like the following: 
> VILMFWCAxxxx
GACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACG

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Note that using while ($string =~ /.../) doesn't make much sense if you don't change the $string - it either doesn't match, or it matches forever. Maybe you wanted to add a /g at the end? Also, (^>) seems like a typo, did you want [^>] instead?

لսႽ† ᥲᥒ⚪⟊Ⴙᘓᖇ Ꮅᘓᖇ⎱ Ⴙᥲ𝇋ƙᘓᖇ

In reply to Re: Where am I going wrong? by choroba
in thread Where am I going wrong? by lairel

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