Maybe collect all your Ensembl ID's in a list, then use this webpage http://www.uniprot.org/uploadlists/ to upload your file, convert them to uniprot, then save the output. With this output, you can now process the conversion?

In reply to Re: Converting Ensembl ID to gene symbol by FreeBeerReekingMonk
in thread Converting Ensembl ID to gene symbol by thomaster

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