yeap the file is clastalw2.exe and NOT clustalw.exe as written on perl error.I was cleary searching for wrong file.

If I C:\> where clustalw2.exe I get eventually: C:\Program Files (x86)\ClustalW2\clustalw2.exeSo I can find the executable by command line. But

 'C:\Program Files (x86)\ClustalW2' is the same i use from the beggining, and even though I ve put ENV{CLUSTALDIR} on the script and add it to Windows Path variable i have this error..

In reply to Re^8: Can't run Clustalw through Bioperl by dimitris852
in thread Can't run Clustalw through Bioperl by dimitris852

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