I have multiple files like data.txt:
@NS500278:42:HC7M3AFXX:1:11101:16723:1045 1:N:0:AACGTGAT
AGATCNGAAGAGCACACGTCTGAACTCCAGTCACAACGTGATATCTCGTATGCCGTCTTCTGCTTGAAAA
+AAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+GGGGGGGGGGGG
+
AAAAA#EEEEEEEEEEEEEEEE6EEEEEAEEEAE/AEEEEEEEAE<EEEEA<A/AE<EE/EEAEEAEEAE
+EEEA///EEEEEEEEEAEEEEEEEEEEEEEEEEEEEE/EEEAEEEAEEEEEEEEEAEAEEEEEEEEEEE
+EAEEEEEAEEAA
@NS500278:42:HC7M3AFXX:1:11101:20279:1046 1:N:0:AACGTGAT
TACAGNGAGCAAACTGAAATGAAAAAGAAATTAATCAGCGGACTGTTTCTGATGTTATGGATGGCGCTGT
+TAATCGCAGCAATGGTGTATCCGCAGGGGATTTTTCCGGTACTGGCAGCGTCCGGCGTTTGGGTAGAGA
+TCGGAAGAGCAC
+
AAAAA#EEEEEEEEAEEEEEEEEEEEEEEEEEEEEAEEEEEEEE/EEEAE6AE<EAEEAEAAEEAEEEEE
+EEAE/EEAEEAEEE6EEEEEAE6A/E<EEEEEEEEAE<EEEEEA/AEEAAEEEEEE//AEE/<<<EEAE
+<66/</AE<<A6
@NS500278:42:HC7M3AFXX:1:11101:18609:1046 1:N:0:AACGTGAT
TACAGNGAGCAAACTGAAATGAAAAAGAAATTAATCAGCGGACTGTTTCTGATGTTATGGATGGCGCTGT
+TAATCGCAGCAATGGTGTATCCGCAGGGGATTTTTCCGGTACTGGCAGCGTCCGGCGTTTGGGTAGAGA
+TCGGAAGAGCAC
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEAEEEAEEEEAEEAEEEE
+AEEEA//EEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
+EEAAAEAEEEEA
I want to print the whole paragraph (four lines) and the count of second line in the file.
The output for above file should be:
@NS500278:42:HC7M3AFXX:1:11101:16723:1045 1:N:0:AACGTGAT
AGATCNGAAGAGCACACGTCTGAACTCCAGTCACAACGTGATATCTCGTATGCCGTCTTCTGCTTGAAAA
+AAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+GGGGGGGGGGGG
+
AAAAA#EEEEEEEEEEEEEEEE6EEEEEAEEEAE/AEEEEEEEAE<EEEEA<A/AE<EE/EEAEEAEEAE
+EEEA///EEEEEEEEEAEEEEEEEEEEEEEEEEEEEE/EEEAEEEAEEEEEEEEEAEAEEEEEEEEEEE
+EAEEEEEAEEAA 1
@NS500278:42:HC7M3AFXX:1:11101:20279:1046 1:N:0:AACGTGAT
TACAGNGAGCAAACTGAAATGAAAAAGAAATTAATCAGCGGACTGTTTCTGATGTTATGGATGGCGCTGT
+TAATCGCAGCAATGGTGTATCCGCAGGGGATTTTTCCGGTACTGGCAGCGTCCGGCGTTTGGGTAGAGA
+TCGGAAGAGCAC
+
AAAAA#EEEEEEEEAEEEEEEEEEEEEEEEEEEEEAEEEEEEEE/EEEAE6AE<EAEEAEAAEEAEEEEE
+EEAE/EEAEEAEEE6EEEEEAE6A/E<EEEEEEEEAE<EEEEEA/AEEAAEEEEEE//AEE/<<<EEAE
+<66/</AE<<A6 2
The code which I have written is:
use strict;
use warnings;
my @files=('data.txt');
for my $input_file (@files) {
my $output_file = $input_file.".out";
process_file($input_file, $output_file);
}
sub process_file {
my($input_file, $output_file) = @_;
my %count;
my $file = shift or die "Usage: $0 FILE\n";
open my $fh, '<', $file or die "Could not open '$file' $!";
open my $fa, '>', $output_file;
$/="";
while (my $line = <$fh>) {
foreach my $str ($line) {
chomp $line;
$count{$str}++;
}
}
foreach my $str (sort keys %count) {
printf $fa "%-s %s", $str."\t", $count{$str};
print $fa ":".$input_file."\n";
}
}
This gives the count of whole paragraph instead of the second line. It matches the whole paragraph but I want to print the whole paragraph and count of only the second line.
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