I started to write this script, but am stuck:
#! perl -w
use strict;
use warnings;
my @fst;
open (my $fst_in, "<", "file1") or die $!;
while (<$fst_in>){
my ( $chr, $bp, $fst ) = split;
next if m/CHR/;
push @fst, [$chr, $bp, $fst];
}
close $fst_in;
my$F=shift@ARGV;
open IN, "$F";
while (<IN>){
my@L=split;
if($L[0]=~ /^$fst->[0]$/
and $L[1]=~ /^$fst->[1]$/
){
if( # compare every field starting at field 3
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