Thank you for the comprehensive reply. Some of this code is beyond my current Perl comprehension, but I'll work through it and let you know if I have any questions.

I am currently writing the code to read in the alignments and residues to align from a large text file. I'll run Benchmark on a subset of the data once that is working.

In reply to Re^3: Per residue sequence alignment - per character string comparison? by proteins
in thread Per residue sequence alignment - per character string comparison? by proteins

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