I am posting the header of one of the .fasta file: 
>167440 TCONS_00167441 scaffold_2269+ 284-1043
AGGGCTCAAGCTTTATTTCACGTAGCTGACTTTACCGTCAGCTCAATTGGAATAGTTTTT
CGCTATGTTCGCAGGCAAGTGAGACGATCCATCAATGCCCTTATCTGCTTCGAAAGAACC
GGTGTCATCCAAACATGGTGAAGAGGTGGCAACTGGATCAATAATAGCTGAAACTTCTAC
TGTACAGGGTTCGGCTTGCCCAACTGTCCAAGCTTGAGATCTATTTTAGAATATGCTTAA
CACAACACATGCAATTCGAACGTTGTTTTCTCGGAAAGATTTGAAAGTAACTCCGTTGGG
TTCAATGCCCGCTAGTCCCATGCATCCTTTCTGTTGGTCAACAACCAACCACAAGTCAAT
CGAATGAATTCTTCAAGACTCCGGACTCTCTTTCTGTCCGGAGGGAATCATTGTTTCTCA
ATCAATCATGCCTCAACTGGATAAATTCACTTATTTCACACAATTTTTCTGGTCATGCCT
TTTCCTCTTTACTTTTTATATTCCCATATGCAATGATGGAGATGGAGTACTTGGGATCAG

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In reply to Re^2: Compare fasta files by cboPerl
in thread Compare fasta files by cboPerl

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