I prefer readable code over concise one, but since you asked for it
# http://perlmonks.org/?node_id=1180396
use strict;
use warnings;
my $sa = 'random,junk no,one,cares about(I,Want,This,stuff) but, (not,
+this) stuff which&might have-random characters';
my $new= $sa =~ s/
(?: ^ .*? \( )? # swallow start till first opening paren
( [^,)]+ ) # match words (non-delimiters)
,? # swallow delimiter
(?: \) .* $ )? # swallow first closing paren till EOL
/ $1 #/xgr;
print "#$new";
# I # Want # This # stuff #
NB: I wouldn't use this.
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