Hello pdahal,
To be honest I never used Perl for this kind of area, so I can not really say that I know how assist you. I did a very short research though and I found this question (translating multiple DNA sequence to protein sequence).
Well although the question may not be what you are looking for, but a fellow monk (polypompholyx) proposes to use BioPerl which I think is what you should work on and possible resolve many problems on the future.
Here is also a nice tutorial (Perl and Bioinformatics).
Hope this helps.
In reply to Re: Recognizing protein name
by thanos1983
in thread Recognizing protein name
by pdahal
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