This is the output I am getting. 
DELIMIT
chrM:307    1    TCAGGGTG    106
chrM:307    2    TCAGGGTG    130
chrM:307    2    TCAGGGTG    129
chrM:307    0    TCAGGGAG    130
chrM:307    0    TCAGCCTG    129
chrM:307    0    TCAAAATG    130
chrM:307    0    TCACGGTG    130
chrM:307    0    AGCGGGGA    129
chrM:307    0    AGCGGGGA    130
chrM:307    0    AGCGGGGA    129
DELIMIT
chrM:308    1    TCAGGGTG    106
chrM:308    2    TCAGGGTG    130
chrM:308    2    TCAGGGTG    129
chrM:308    0    TCAGGGAG    130
chrM:308    0    TCAGCCTG    129
chrM:308    0    TCAAAATG    130
chrM:308    0    TCACGGTG    130
chrM:308    0    AGCGGGGA    129
chrM:308    0    AGCGGGGA    130
chrM:308    0    AGCGGGGA    129
DELIMIT
chrM:309    1    TCAGGGTG    106
chrM:309    2    TCAGGGTG    130
chrM:309    2    TCAGGGTG    129
chrM:309    0    TCAGGGAG    130
chrM:309    0    TCAGCCTG    129
chrM:309    0    TCAAAATG    130
chrM:309    0    TCACGGTG    130
chrM:309    0    AGCGGGGA    129
chrM:309    0    AGCGGGGA    130
chrM:309    0    AGCGGGGA    129
DELIMIT

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In reply to Re: Find duplicate based on specific fields while allowing 2 mismatch by amitgsir
in thread Find duplicate based on specific fields while allowing 2 mismatch by amitgsir

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