Dear Monks,

I am looking for a perl environment for building pipelines. An environment that will allow be to easily document my pipes (something like a doxygen to create both latex and html documentation), that will allow me to easily and automatically split the input and fork the process (basic paralelization), that will allow me to combine tools in different ways, that will not bug me with the environmental setup and that can be run in a pre-set env, both as a user and a superuser...

What I started to build is a system that essentially creates a set of modules for each tool utilized which eliminates a lot of background work and allows to hardcode some of the tools. But given the amount of work and many pitfalls of my system I was wondering whether someone has already tried to do something like that.

thank you

baxy

PS

A similar but toooooo fancy, not cli based and complicated (not flexible in any aspect ) system is galaxy
Any advice ?

In reply to Perl pipeline builder by baxy77bax

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