Hello everyone, I need your help, I have a file like this:
>1 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG >2 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG >3 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG
And I would like to change all the numbers by a list of words, I made the next program with perl but I am new using the program and I dont know who is wrong with that.
%lista2=( 1 => "CAT00.3", 2 => "CAT43.1", 3 => "CAT40.3" ); open(OA,">file2.txt"); foreach $key (keys %lista2){ open(SAL,"file.txt"); while(<SAL>) { chomp; if(/>/) { @w=split("\t"); $r=0; s/\;//g; if (/%lista2[i]/) { print OA "$_ $lista2{$key}\n" ; $r=1; } } } } close(SAL); close(OA);
I would to get this:
>CAT00.3 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG >CAT43.1 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG >CAT40.3 AACTCTGGGACAATGGCACACGGGAAACAGATAATGAACGATCAGCACAGGGAACTAGCG
But Idont know how do that.
In reply to how to remplace a names in a file by keys with hash by zelman796
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