Your exon and intron regex was limiting the results if I understand your question correctly. I reworked the code to to: 
foreach(<INFO1>)
{
    # got rid of the '*' which is too greedy
    # I made the date matches specific to the
    # example input you provided in your post
    # you may need to adjust for more options
    # in the matches depending on your data
    # consistency
    if(/^DATE\s+(\d{2})-(\w{3})-(\d{4})/){
        print OUT "DBACC\t $no\n";
        print OUT "Date\t $1-$2-$3\n";
        $no++;
    
    # made one conditional that gets both
    # exon and intron.  Used a [] (character
    # class match) instead of the \d*-
    # The + after it allows for 1 or more
    # of a 0-9 , ';' or '-'

    } elsif(/\s+\/(intr|ex)on="([\d-;]+)"\n/) {

    # added a split on ';' in case you want
    # or need to do something with each one
    # seperated by a ';'

        my @values = split(/;/,$2);
        foreach (@values) {

    # needed to uppercase the matched prefix
    # based on your example output since
    # the match was on the lowercase prefix

            print OUT ucfirst($1) . "on\t \{Translation\%$_\}\n";
       }

    # if you don't need to do the split just do this
    # print OUT ucfirst($1) . "on\t \{Translation\%$2\}\n";       

    } else {
    print OUT "line $counter\n";
    }
    $counter++;
}

[download]
There are several good nodes on regex in the tutorial section. See the gotcha one in particular.

In reply to Re: about regular expression by trs80
in thread about regular expression by agustina_s

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