Hi all, I got stuck up on this regular expression. The file is a multi line file with a Name=Value record on each line. The Value is a comma seperated record with multiple fields. missing fields are represented by continous commas. I have a pattern in the middle of each line, which is as follows Word ResGen preceded by a comma which is preceded by a comma OR any word and a comma which is preceded by a comma OR any word and a comma Which may or may not be preceded by a ". I need to see weather a " quote is present or not present. If " is not present add a " in this location. I am including some of the sample lines of this file. The example lines do not show the exhaustive list of possibilites. Example sample lines
GENE1="Rattus norvegicus serum and glucocorticoid-regulated kinase (sg +k) mRNA, complete cds,NM_019232,333,ResGen,ATP binding|protein serine +/threonine kinase|protein amino acid phosphorylation,,,,29517 GENE2="ESTs, Weakly similar to putative serine/threonine protein kinas +e MAK-V [M.musculus]",NM_144755,331,ResGen,,,,,246273 GENE3="Thiosulfate sulphurtransferase (rhodanese)",X56228,329,ResGen,m +itochondrion|sulfate transport|thiosulfate sulfurtransferase,,,,25274 GENE4="Spleen tyrosine kinase,NM_012758,327,ResGen,ATP binding|protein + tyrosine kinase|intracellular signaling cascade|protein amino acid p +hosphorylation,,,,25155 GENE5="Spleen kinase 24,NM_012758,,ResGen,ATP binding|protein tyrosine + kinase|intracellular signaling cascade|protein amino acid phosphoryl +ation,,,,25155
Thanks & Best regards to all PerlMonks vemana

In reply to Need method to create Regular expression for known pattern in the middle of a line by Ya

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.