Very likely you're looking at the first part of the windows linebreak (\r\n). Try running this code with the filename as the argument: 
#!/usr/bin/perl -w
use strict;

while (my $fname = shift) {
        next unless -f $fname;
        open F,"<$fname" or die "Cannot open $fname: $!\n";
        my $file = join('',<F>);
        close F;
        $file =~ s/\r\n?/\n/g;
        open F,">$fname" or die "Cannot write $fname: $!\n";
        print F $file;
        close F;
}

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See the Newlines section in perlport for more info. 
-- 
#!/usr/bin/perl -np
BEGIN{@ARGV=$0}s(^([^=].*)|=)()s;
=Just another perl hacker

[download]

In reply to Re: Removing Windows newlines by Joost
in thread Removing Windows newlines by Anonymous Monk

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