The OP wanted a general place where the executable, modules, and auxilary files should go on a generic general linux install. The advice I gave him (to the best of my knowlage, of course) matches the Linux Filesystem Higherachy Standard, the standard on how linux machines should be orginized in terms of what goes where in the file namespace.
Of course, like everything else, if an individual site doesn't want to follow the standards, it should be free to. An individual installing on such a site shouldn't be using a make install target, and in such a case the OP's question is moot.
Warning: Unless otherwise stated, code is untested. Do not use without understanding. Code is posted in the hopes it is useful, but without warranty. All copyrights are relinquished into the public domain unless otherwise stated. I am not an angel. I am capable of error, and err on a fairly regular basis. If I made a mistake, please let me know (such as by replying to this node).
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