Here's most of the code for the problem I'm talking about:

@logs = <@ARGV>;
%reports=();
%results=();

open (INPUT_IN, "FindSitesInput.txt")|| die "Can't open input file! :$
+!";

while (defined($currentLine = <INPUT_IN>)) 
{
    $_=$currentLine;
    if(! m/^\#/)
    {
        #split currentLine into tab-delimited tokens
        @tokens = split("\t",$currentLine);
        my @temp = ($tokens[1], $tokens[2], $tokens[3], $tokens[4]);
            
            $reports{$tokens[0]}=\@temp;
            my @data=();
            $results{$tokens[0]}=\@data;
        }
    }
}


close (INPUT_IN) || die "Can't close input file: $!";

#now run the reports on each log file
foreach $logfile(@logs)
{
    open (LOG_IN, "$logfile")|| die "Can't open $logfile! :$!";
    while (defined($currentLine = <LOG_IN>)) 
    {    
    
            @tokens = split(" ",$currentLine);
                
        foreach $rep (keys %reports)
        {
            
            @comparisons = split(" ", $reports{$rep}[0]);
            foreach $item (@comparisons)
            {
                if($reports{$rep}[2] == "site")
                {                    
                    $_=$tokens[6];
                    if(/$item/)
                    {
                        
                        push @{$results{$rep}}, $currentLine;
                    }
                }
                elsif ($reports{$rep}[2] == "ip")
                {
                    $_=$tokens[2];
                    if(/$item/)
                    {
                    
                        push @{$results{$rep}}, $currentLine;
                    }
                }
            }        
        }
        
    }
    close (LOG_IN) || die "Can't close log file: $!";
    
    #now write the output files for each report for this log
    foreach $rep (keys %results)
    {
        open (OUTPUT, ">$logfile-$rep")|| die "Can't open $logfile-$re
+p! :$!";
        print OUTPUT @{$results{$rep}};
        if(close OUTPUT) 
        {    
            if(!($reports{$rep}[2]eq"none"))
            {
                system("c:\\blat\\blat $logfile-$rep -t \"$reports{$re
+p}[2]\"");
            }
        }
        else
        {
          die "Can't close output file: $!";
        }
    }
    
}
[download]

The input values are read from a file (I've tested to verify that the data structure is created properly).

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