I definitely agree, Bioperl is the best choice for writing parsers for most sequence or alignment formats, such as FASTA, BLAST, ClustalX, etc.

-Tats

In reply to Re: Re: Re: Performance Tuning: Searching Long-Sequence Permutations by Itatsumaki
in thread Performance Tuning: Searching Long-Sequence Permutations by Itatsumaki

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