You could try
HTA, which runs like a limited standlone CGI without webserver. But you're solution might not need to be a CGI one, I don't know.
HTA example:
<html>
<head>
<TITLE>my tiny weeny tady lil test...</TITLE>
<HTA:APPLICATION
ID="HTAEx"
APPLICATIONNAME="HTAEx"
ICON="e.ico"
WINDOWSTATE="normal"
>
</head>
<body>
<pre>
<SCRIPT language="PerlScript">
use Win32::Script qw/WScript/ ;
$output = WScript('Shell')->Exec("ls")->StdOut->ReadAll ;
$window->document->write("\nFiles:\n\n$output") ;
</SCRIPT>
</pre>
</body>
</html>
It lists the files you have in your current directory, assuming you have ls.exe in your DOS PATH. "dir" won't work since it's a command within command.com or DOS shell, not a executable by itself.
______________________
Update: The file name of the example above should have an hta extension, not html; something like foo.hta.
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