If you don't want to keep the original file open, why don't you simply copy it and read line by line with
while (<>)? I think 20Meg on Harddisk is less expensive than 20Meg of Memory.
However. I think you can shorten your re:
You have: /(zone\s+"$domain"\s+\{\r?\n(.*?)\r?\n(.*?)\r?\n(\s+)?\};(\r
+?\n)+)/
Won't this do: /(zone\s+"$domain"\s+\{[^}]+\};[\r\n]+)/o
Since you don't need all the elements found in $2, $3..., why store them?
Should you need them, you can extract them later, when you found a match for the domain.
You should also ad o to your regexp in order to insert $domain's content just once into your re.
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