Bravo (++ vote)
dannoura on getting the HoH right!
Since you invited comments, I would replace the @temp array with scalars, and use them thus:
my ($title,$file,$offset) =split/\t/;
$HoH{$title}{file}=$file;
$HoH{$title}{offset}=$offset;
That makes the code a whole lot easier to read and marginally, more efficient.
To improve it marginally (although, newbies may find this more confusing), the exact equivalent code is:
my ($title,$file,$offset) =split/\t/;
$HoH{$title}={file=>$file,
offset=>$offset};
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