Hi Monks!
I'm working on yet another program, and have run into a little problem. The program is designed to remove data from a series of text files and print it out in a series of columns. Thus far, my program gets all the required data, but is unable to output it correctly. The sub get_signal gives me a hash of arrays containing my data; I need to asign each of these arrays a different name, and then know those names so I can print them. Theoretically, I want this automated enough so that no matter how many files are inputed into the program(and therefore no matter how many arrays I end up with), the program will assign each one a unique variable name and then be capable of printing them out. My code:
#! usr/local/bin/perl
use Cwd;
print STDOUT "Please enter the name and location of the directory to p
+arse\:\n";
$directory=<STDIN>;
chomp $directory;
open (OUTPUTFILE,">junk.txt");
opendir (DIR, "$directory") or die "Failed to open directory: $!";
@filename=readdir(DIR);
@trash=splice(@filename, 0,2);
@genius=@filename;
sub get_signal {
while (@filename) {
$file=shift @filename;
@final_data='';
use Cwd 'chdir';
chdir "./data";
open (FILE, "$file") or die;
@data=<FILE>;
$spliced_data=splice(@data, 1, 14);
foreach (@data) {
($a, $b, $c, $d, $e, $f)=split(/\t/);
push(@final_data, "$d\n");}
%hash={"$file"=>@final_data}; #this hash assignment +doesn't wor
+k
close (FILE);
}
@values=values(%hash);
return @values;
}
sub get_targets {
$target=shift @genius;
use Cwd 'chdir';
chdir "./data";
open (FL, "$target") or die;
@info=<FL>;
$excess=splice(@info, 1, 14);
foreach (@info) {
($z, $x, $w, $y, $u, $v)=split(/\t/);
push(@targets, "$z\n");}
close (FL);
return @targets;
}
@column=get_targets;
@next_columns=get_signal;
for ($i=0;$i<=scalar(@next_columns);$i++) {
@$i=@next_columns[$i];} #my attempt at assigning a +unique variabl
+e, which doesn't work.
print @next_columns;
print OUTPUTFILE "@final_data";
close OUTPUTFILE;
exit;
Thank you all for your time and thoughts!!!
bioinformatics
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