Is each sequence an object? If so, make addregion() a method, and have it store \@nreg on the object as well.

Otherwise, what about using something like this (pseudocode)...

my %nregs;

foreach <$sequences> {
    local @nreg;
    do_addregion_for_all_regions();
    $nregs{getseqname($_)} = \@nreg;
}

[download]

This way, you have a set of @nreg, one for each sequence, keyed on the sequence name.

If I am way off base here, no problem. It has been a while since I have done anything biology.

In reply to Re: Array of arrays used within object by MidLifeXis
in thread Array of arrays used within object by knirirr

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