So this is a string of 26 characters, '0', '1', '2', '3', '4', '5', '6', , '7', '8', '9', 'a', 'b', 'c', 'd', 'e', 'f'; in other words ASCII values 48, 449, 50, 51, ,52, 53, 54, 55, 56, 57, 97, 98, 99, 100, 101, 102. Isn't that somewhat inefficient, to use 8-bit characters to store hex values?
You could use BigInt; You could use a set of scalars to store N/billion & N%billion ....; You could use pack & unpack to store hex digits in 4 bits.
--
TTTATCGGTCGTTATATAGATGTTTGCA
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