You could try the following shell script:
#!/bin/bash
do_modeling()
{
FILES=`ls ./`;
for f in $FILES;; do
  echo $f
  cp -f $f malign.top
  cp -f $f get-model.top
  /usr/local/modeller6v2/bin/mod6v2 malign.top
  /usr/local/modeller6v2/bin/mod6v2 get-model.top
done
}

do_modeling
do_modeling

[download]

In reply to Re: automating linux commands in perl by Roger
in thread automating linux commands in perl by Anonymous Monk

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