I cannot comment on perl 5.6.1 behavior, as I don't have a copy. But this matches fine on perl 5.8.0:
use utf8; use warnings; print "matched\n" if 'pf1ad1%/pf2%2Fad2/pdad3/pfad4/filename' =~ m|^((?x-ism: [^\?]*? ))/((?x-ism: [ +^/\?]*? ))$|;
so it is possible that you have a bug in 5.6.1.

One other note: you don't need to escape '?' inside a character class. This works just as well:

use utf8; use warnings; print "matched\n" if 'pf1ad1%/pf2%2Fad2/pdad3/pfad4/filename' =~ m|^((?x-ism: [^?]*? ))/((?x-ism: [^ +/?]*? ))$|;
-Mark

In reply to Re: regex won't match with utf8 enabled... by kvale
in thread regex won't match with utf8 enabled... by Beechbone

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